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Table 4 The most significant motifs in the extended promoter sequences spanning from -250 to +50, as identified by the MEME algorithm

From: Computational analysis of core promoters in the Drosophila genome

Motif Consensus Number of sequences IC (bit) E value
1 YGGTCACACTR 391 16.4 5.0e-369
2 CKCTCTCTCKCTCTC 166 19.1 1.7e-203
3 KCGRCGNCGRCNGCR 153 18.5 1.1e-151
4 TTTKTTTWTWTWTWT 514 13.8 1.5e-155
5 TATCGATAR 246 15.0 4.4e-78
6 CAGCCTGWTTY 187 15.8 1.5e-80
7 STGGCAACGCYR 104 17.6 1.4e-55
8 GTGYGTGTGTGYGTG 106 19.1 6.4e-96
9 YTGCTKYTGCYKYTG 58 20.0 1.2e-39
10 GCGCYTWACAGCAC 34 21.9 9.5e-24
  1. See Table 2 for explanation. Motif 1 corresponds to motif 1 in Table 2; motif 5 to motif 2 (DRE); motif 7 appears to be a variant of motif 8.