From: Finding signals that regulate alternative splicing in the post-genomic era
Name | Description | URL | Published reference |
---|---|---|---|
Alternative Splicing database | Alternative exon database compiled from the literature | [40] | |
Alternative splicing databases | Several alternative splicing databases, including a database of splice variants of disease genes, a complete splice-site database, and a database of alternative splice forms for seven organisms | Â | |
AltExtron | Transcript-confirmed human introns and exons; includes alternatively spliced data subsets | http://www.bit.uq.edu.au/altExtron/ or http://www.ebi.ac.uk/~thanaraj/altExtron/ | [6] |
ASAP | Human alternative splicing database; part of the Alternative Splicing Annotation Project | [43] | |
ASDB | Alternatively spliced gene database; includes protein and nucleotide sequences for human, mouse, rat, Drosophila, Caenorhabditis elegans, chicken, cow and rabbit and viruses | [41] | |
AsMamDB | Alternatively spliced mammalian genes; includes human, mouse, and rat | [42] | |
Gene Resource Locator | Gene map database; includes information on alternatively spliced transcripts | [44] | |
Intronerator | Introns in C. elegans; includes a catalog of alternatively spliced transcripts | [45] | |
ISIS | All introns identified in GenBank | [46] | |
PALS db | Putative alternative splicing predicted by EST alignments for mouse and human | [47] | |
SELEX-DB | In vitro selected oligomers; includes SELEX sequences for splicing factors and is supplemented by SYSTEM (experimental design) and CROSS_TEST (cross-validation test) databases | [48] | |
SpliceDB | Mammalian splice sites | http://genomic.sanger.ac.uk/spldb/SpliceDB.html or http://www.softberry.com/spldb/SpliceDB.html | [49] |
SpliceNest | A database that maps GeneNest onto human genomic sequence and is integrated with GeneNest (EST clusters for human, mouse, zebrafish and Arabidopsis thaliana) and SYSTERS (protein sequence clusters) databases | [50] | |
STACK | Putative human transcripts reconstructed from ESTs; includes the context of different tissues or pathological states | [51] | |
Yeast Intron Database | Introns in Saccharomyces cerevisiae | [52] |