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Table 1 List of 51 chromosomes under study

From: Asymmetric directional mutation pressures in bacteria

Chromosome

Strain

ACC

EMGLib

Genome (bp)

Chir

G+C (%)

P 12

P 3

GC IGR

Aeropyrum pernix

K1

AP0000 [58,59,60,61,62,63,64]

CG0043

1,669,695

No

56.3

0.567

0.662

0.506

Aquifex aeolicus

VF5

AE000657

CG0034

1,551,335

No

43.5

0.442

0.488

0.386

Archaeoglobus fulgidus

DSM 4304

AE000782

CG0032

2,178,400

No

48.6

0.507

0.489

0.377

Bacillus halodurans

C-125

BA000004

CG0057

4,202,353

Yes

43.7

0.466

0.403

0.384

Bacillus subtilis

168

AL009126

CG0031

4,214,814

Yes

43.5

0.455

0.424

0.364

Borrelia burgdorferi

B31

AE000783

CG0033

910,724

Yes

28.6

0.347

0.197

0.212

Buchnera sp.

APS

AP000398

CG0058

640,681

Yes

26.3

0.360

0.122

0.155

Caulobacter crescentus

CB15

AE005673

CG0068

4,016,947

Yes

67.2

0.600

0.856

0.625

Campylobacter jejuni

NCTC11168

AL111168

CG0047

1641481

Yes

30.6

0.381

0.175

0.205

Chlamydia muridarum

MoPn

AE002160

CG0054

1069412

Yes

40.3

0.462

0.317

0.360

Chlamydia trachomatis

D/U W-3/Cx

AE001273

CG0037

1,042,519

Yes

41.3

0.468

0.330

0.360

Chlamydophila pneumoniae

CWL029

AE001363

CG0041

1,230,230

Yes

40.6

0.459

0.332

0.323

Chlamydophila pneumoniae

AR39

AE002161

CG0053

1,229,853

Yes

40.6

0.460

0.271

0.340

Chlamydophila pneumoniae

J138

BA000008

CG0062

1,228,267

Yes

40.6

0.459

0.332

0.323

Deinococcus radiodurans chromosome 1

R1

AE000513

CG0049

2,648,638

Yes

67.0

0.622

0.801

0.623

Deinococcus radiodurans chromosome 2

R1

AE001825

CG0050

412,348

Yes

66.7

0.605

0.824

0.593

Escherichia coli

K-12

U00096

CG0028

4,639,221

Yes

50.8

0.514

0.534

0.425

Escherichia coli

EDL933

AE005174

CG0069

5,528,970

Yes

50.4

0.513

0.527

0.425

Escherichia coli

RIMD 0509952

BA000007

CG0070

5,498,450

Yes

50.5

0.514

0.528

0.424

Halobacterium sp.

NRC-1

AE004437

CG0065

2,014,239

No

67.9

0.600

0.880

0.634

Haemophilus influenzae

KW20

L42023

CG0001

1,830,140

Yes

38.2

0.447

0.265

0.312

Helicobacter pylori

26695

AE000511

CG0001

1,667,877

Yes

38.2

0.396

0.404

0.302

Helicobacter pylori

J99

AE001439

CG0042

1,643,831

Yes

39.2

0.397

0.411

0.308

Lactococcus lactis

IL1403

AE005176

CG0074

2365589

Yes

35.5

0.425

0.229

0.276

Methanobacterium thermoautotrophicum

H

AE000666

CG0030

1,751,377

No

49.5

0.525

0.500

0.383

Methanococcus jannaschii

DSM 2661

L77117

CG0003

1,664,977

No

31.4

0.347

0.307

0.252

Mycobacterium leprae

TN

AL450380

CG0071

3,268,203

Yes

57.8

0.576

0.638

0.546

Mycobacterium tuberculosis

H37Rv

AL123456

CG0035

4,411,529

Yes

65.6

0.604

0.787

0.625

Mycobacterium tuberculosis

CDC1551

AE000516

CG0073

4,403,836

Yes

65.6

0.605

0.783

0.627

Mycoplasma genitalium

G-37

L43967

CG0002

580,073

Yes

31.7

0.367

0.221

0.272

Mycoplasma pneumoniae

M 129

U00089

CG0011

816,394

Yes

40.0

0.409

0.403

0.339

Mycoplasma pulmonis

UAB CTIP

AL445566

CG0072

963879

Yes

26.6

0.343

0.140

0.182

Neisseria meningitidis

Z2491 (A)

AL162759

CG0056

2,184,406

Yes

51.8

0.503

0.598

0.444

Neisseria meningitidis

MC58 (B)

AE002098

CG0055

2,272,351

Yes

51.5

0.502

0.593

0.447

Pasteurella multocida

PM70

AE004439

CG0075

2,257,487

Yes

40.4

0.453

0.323

0.329

Pseudomonas aeruginosa

PA01

AE004091

CG0059

6,264,403

Yes

66.6

0.583

0.870

0.616

Pyrococcus abyssi

GE5

AL096836

CG0045

1,765,118

Yes

44.7

0.457

0.511

0.379

Pyrococcus horikoshii

OT3

AP00000 [1,2,3,4,5,6,7]

CG0038

1,738,505

Yes

41.9

0.449

0.428

0.376

Rickettsia prowazekii

Madrid E

AJ235269

CG0040

1,111,523

Yes

29.0

0.387

0.168

0.242

Staphylococcus aureus

Mu50

BA000017

CG0076

2,878,134

Yes

32.9

0.404

0.205

0.277

Staphylococcus aureus

N315

BA000018

CG0077

2,813,641

Yes

32.8

0.404

0.204

0.274

Streptococcus pyogenes

SF370

AE004092

CG0078

1,852,441

Yes

38.5

0.439

0.297

0.325

Sulfolobus solfataricus

P2

AE006641

CG0079

2,992,245

No

35.8

0.409

0.325

0.310

Synechocystis sp.

PCC 6803

AB001339

CG0010

3,573,470

No

47.7

0.503

0.468

0.421

Thermoplasma acidophilum

DSM 1728

AL139299

CG0060

1,564,906

Yes

46.0

0.473

0.558

0.361

Thermotoga maritima

MSB8

AE000512

CG0044

1,860,725

Yes

46.2

0.456

0.524

0.397

Treponema pallidum

Nichols

AE000520

CG0036

1,138,011

Yes

52.8

0.537

0.538

0.541

Ureaplasma urealyticum

ATCC 700970

AF222894

CG0048

751,719

Yes

25.5

0.334

0.112

0.178

Vibrio cholerae chromosome 1

N16961

AE003852

CG0063

2,961,149

Yes

47.7

0.494

0.470

0.412

Vibrio cholerae chromosome 2

N16961

AE003853

CG0064

1,072,315

Yes

46.9

0.482

0.458

0.431

Xylella fastidiosa

9a5c

AE003849

CG0061

2,679,306

Yes

52.7

0.535

0.552

0.468

  1. The first column is the species names with chromosome number when necessary, the second the strain that was sequenced. ACC is the accession number in the DDBJ/EMBL/GenBank database, EMGLib the accession number in EMGlib database [88]. Chir denotes whether a clear chirochore structure allowed for the classification of subsequences (for example, CDS) in the leading or lagging group. The G+C contents are given for the whole genome (G+C), in first and second codon positions (P12), in third codon positions (P3), and large intergenic spaces (GCIGR) as defined in the Materials and methods section.