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Table 1 Spike-in transcript pool

From: Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls

Spiked transcript

ATCC accession number

Affymetrix gene qualifier

Final concentration (pmol)

Final concentration (ppm)

DAPM

87826

AFFX-DapX-M_at

30

950

DAP5

87827

AFFX-DapX-5_at

10

317

CRE5

87832

AFFX-CreX-5_at

5

158

BIOB5

87825

AFFX-BioB-5_at

2.5

79

BIOD3

87830

AFFX-BioDn-3_at

1.2

38

BIOB3

87828

AFFX-BioB-3_at

0.6

19

CRE3

87835

AFFX-CreX-3_at

0.4

13

BIOC5

87833

AFFX-BioC-5_at

0.3

10

BIOC3

87834

AFFX-BioC-3_at

0.2

6

DAP3

87831

AFFX-DapX-3_at

0.15

5

BIOBM

87829

AFFX-BioB-M_at

0.1

3

  1. Spike-in transcript pool. The 11 spiked transcripts and their final concentrations in the hybridization cocktails are listed. The Affymetrix gene qualifier column indicates the name of the probe set on Affymetrix arrays that monitors each spiked transcript.