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Figure 6 | Genome Biology

Figure 6

From: A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster

Figure 6

Structure of You elements in strain y; cn bw sp. (a) The full-size You element is represented as a white box, with the two ORFs indicated as arrows. Positions of SmaI and SacI restriction sites are shown and the black box above the element indicates the PCR fragment used as a probe in Figure 5b. Thick lines below represent full-size (1-3) and 5' truncated (4) You elements found in Release 1. The internal deletion in element 3 is indicated as a gray region. (b) Sequences of integration sites of You elements shown in (a). Target site duplications are shown in bold and underlined. The most 5' and 3' nucleotides of each element are shown in italics and separated by dots. For full-length elements, alignments in 5' region have been made to show variation in the 5' junction. The sequences of elements corespond to following coordinates in release 1: 1, 56440-61816 in AE002620; 2, 2419411-2424785 in AE002647; 3, reverse complement of 1119136-1124111 in AE002566; 4, reverse complement of 5105-6524 in AE002601.

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