Table 2 Comparison of the regions found using biastools scan mode versus the bias sites detected using simulate mode. The analysis is on chromosome 20, where 3, 384 segments are called as biased by scan mode, adding to \(4.9\%\) of chromosome 20
From: Measuring, visualizing, and diagnosing reference bias with biastools
| Â | Â | Total sites | Inside bias region | Outside bias region |
|---|---|---|---|---|
SNV | Balanced | 52,173 | 9915 (19%) | 42,258 (81%) |
Bias (loss) | 2108 | 1520 (72%) | 588 (28%) | |
Bias (flux) | 495 | 418 (84%) | 77 (16%) | |
Bias (local) | 169 | 142 (84%) | 27 (16%) | |
Outliers | 78 | 61 (78%) | 17 (22%) | |
Bias (all) | 2850 | 2141 (75%) | 709 (25%) | |
Gap | Balanced | 10,386 | 2707 (26%) | 7679 (74%) |
Bias (loss) | 628 | 482 (77%) | 146 (23%) | |
Bias (flux) | 112 | 102 (91%) | 10 (9%) | |
Bias (local) | 122 | 81 (66%) | 41 (34%) | |
Outliers | 22 | 22 (100%) | 0 (0%) | |
Bias (all) | 884 | 687 (78%) | 197 (22%) |